Research Articles

  • M. Tateno and S. Ishihara, Interfacial-curvature-driven coarsening in mass-conserved reaction-diffusion systems. Phys. Rev. Res. 3, 023198 (2021)
  • S. Nakayama, T. Yano , T. Namba, S. Konishi, M. Takagishi, E. Herawati, T. Nishida, Y. Imoto, S. Ishihara, M. Takahashi, K. Furuta, K. Oiwa, A. Tamura, S. Tsukita. Planar cell polarity induces local microtubule bundling for coordinated ciliary beating. J. Cell Biol. 220 (7), e20201003 (2021)
  • T. Namba, S. Ishihara. Cytoskeleton polarity is essential in determining orientational order in basal bodies of multi-ciliated cells. PLoS Compt. Biol.16 (2), e1007649 (2020)
  • V. Nier, G. Peyret, J. d’Alessandro, S. Ishihara, B. Ladoux, and P. Marcq. Kalman inversion stress microscopy. Biophys. J. 115, 1808-1816 (2018)
  • S. Ishihara, P. Marcq, and K. Sugimura. From cells to tissue: A continuum model of epithelial mechanics. Phys. Rev. E 96 022418 (2017)
  • E. Herawati*, D.Taniguchi*, H. Kanoh, K. Tateishi, S. Ishihara and S. Tsukita. (*equal contribution) Multiciliated cell basal bodies align in stereotypical patterns coordinated by the apical cytoskeleton. J. Cell Bilol. 214, 571-586 (2016)
  • T. Torisawa*, D. Taniguchi*, S. Ishihara, and K. Oiwa. (* equal contribution) Spontaneous Formation of a Globally Connected Contractile Network in a Microtubule-Motor System. Biophys. J. 111, 373-385 (2016)
  • H. Nogucci and S. Ishihara. Collective dynamics of active filament complexes. Phys. Rev. E 93, 052406 (2016)
  • V. Nier, S. Jain, C. T. Lim, S. Ishihara, B. Ladoux, P. Marcq. Inference of Internal Stress in a Cell Monolayer. Biophys. J 110, 1625-1635 (2016)
  • B. Guirao, S. U. Rigaude, F. Bosveld, A. Bailles, J. Lopez-Gay, S. Ishihara, K. Sugimura, F. Graner, Y. Bellaïche. Unified quantitative characterization of epithelial tissue development. eLife 4:e08519 (2015)
  • A. Nakajima, S. Ishihara, D. Imoto and S. Sawai, Rectified directional sensing in long-range cell migration. Nat. Comm., 5, 5367 (2014) 
  • N. Saito, S. Ishihara and K. Kaneko, Evolution of Genetic Redundancy : The Relevance of Complexity in Genotype-Phenotype Mapping New J. Phys. 16, 063013 (2014) 
  • K. Sugimura# and S. Ishihara# (#corresponding authors)The mechanical anisotropy in a tissue promotes ordering in hexagonal cell packing Development, 140 4091-4101 (2013) [In this issue]
  • D. Taniguchi, S. Ishihara, T. Oonuki, M. Honda-Kitahara, K. Kaneko and S. Sawai Phase geometries of two-dimensional excitable waves govern self-organized morphodynamics of amoeboid cells PNAS vol. 110 no. 13 (2013)
  • N. Saito, S. Ishihara and K. KanekoThe Baldwin effect under multi-peaked fitness landscapes: Phenotypic fluctuation accelerates evolutionary rate. Phys. Rev. E, 87, 052701 (2013) [arXiv:1210.5299]
  • K. Sugimura, Y. Bellaïche, F. Graner, P. Marcq and S. Ishihara Robustness of force and stress inference in an epithelial tissue. Conf Proc IEEE Eng Med Biol Soc,  10.1109/EMBC.2013.6610100.
  • S. Ishihara, K. Sugimura, S.J. Cox, I. Bonnet, Y. Bellaïche and F. GranerComparative study of non-invasive force and stress inference in tissue Eur. Phys. J. E 36, 45 (2013), in topical issue `Physical constraints of morphogenesis and evolution’, selected for front cover of the journal[arXiv:1301.4298]
  • Y. Kondo, K. Kaneko and S. Ishihara Identifying dynamical systems with bifurcations from noisy partial observation Phys. Rev. E 87, 042716 (2013)
  • H. Sano, P.S. Kunwar, A.D. Renault, V. Barbosa, I.B.N. Clark, S. Ishihara, K. Sugimura and R. Lehmann The Drosophila actin regulator ENABLED regulates cell shape and orientation during gonad morphogenesis PLoS One 7: e52649 (2012) 
  • S. Ishihara# and K. Sugimura# (#corresponding authors) Bayesian inference of force dynamics during morphogenesis Journal of Theoretical Biology, 313: 201-211 (2012).
  • A. Nakajima and S. Ishihara Kinetics of the cellular Potts model revisited New Jour. Phys. 3, 033035 (2011)
  • M. Otsuji, Y. Terashima, S. Ishihara, S. Kuroda and K. Matsushima A Conceptual Molecular Network for Chemotactic Behaviors Characterized by Feedback of Molecules Cycling Between the Membrane and the Cytosol Sci. Signal. 3, ra89 (2010)
  • A. Nakajima, T. Isshiki, K. Kaneko and S. Ishihara Robustness under Functional Constraint: The Genetic Network for Temporal Expression in Drosophila Neurogenesis PLoS Compt Biol 6(4): e1000760 (2010)
  • K. Fujimoto, S. Ishihara and K. Kaneko Network Evolution of Body Plans PLoS One 3(7): e2772 (2008)
  • S. Ishihara and T. Shibata Mutual interaction in network motifs robustly sharpens gene expression in developmental processes J. Theor. Biol. 252 131-144 (2008)
  • M. Otsuji, S. Ishihara, C. Co, K. Kaibuchi, A. Mochizuki and S. Kuroda A Mass Conserved Reaction-Diffusion System Captures Properties of Cell Polarity PLoS Comput Biol 3(6): e108. (2007)
  • S. Ishihara, M. Otsuji and A. Mochizuki Transient and steady state of mass-conserved reaction-diffusion systems Phys. Rev. E 75 015203(R) (2007)
  • S. Ishihara and K. Kaneko Turing pattern with proportion preservation J. Theor. Biol. 238 683-693 (2006)
  • S. Ishihara, K. Fujimoto and T. Shibata Cross-taliking of network motifs in gene regulation that generates temoral pulses and spatial stripes Genes to Cells 10 1025- (2005)
  • S. Ishihara and K. Kaneko Magic number 7 $\pm$ 2 in networks of threshold dynamics Phys. Rev. Lett. 94 058102 (2005)
  • S. Ishihara and K. Kaneko Simple Dynamical Model with History Dependence J. Phys. Soc. Jpn. 71 2357- (2002)
  • 石原秀至「質量保存の下での反応拡散系のダイナミクス」 (第5回生物数学の理論とその応用,研究会報告)京都大学数理解析研究所講究録 1663, 41-46, 2009-09 
  • 石原 秀至「Network motifによる遺伝子発現調節」(動的システムの情報論4-シグナル伝達とコミュニケーション-,研究会報告)物性研究 84 624 (2005)
  • 石原 秀至 「多重定常状態の履歴依存性」(修士論文(2000年度))物性研究 77 153 (2001)

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